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Theis Lab (Helmholtz Munich)

Mentions in corpus: 6
Type: academic
Region: EU
Site: https://www.helmholtz-munich.de/en/icb/pi/fabian-theis

TL;DR

Methodological reference class; author of 2026 compositional-FM perspective.

Papers

  • From modality-specific to compositional foundation models — Theis et al., Cell Systems, 2026
    Post-reckoning forward path — stop scaling monoliths.

Tools shipped

  • Nicheformer — Theis lab, Nature Methods, 2025
    Spatial-omics sc-FM with a niche-aware objective.
  • scvi-tools — Theis Lab
    Single-cell methodology reference framework underpinning much of the field.
  • SpatialData — unified spatial-omics data framework — Marconato, Palla et al. (Theis + Stegle)
    Standard for spatial transcriptomics data representation.
  • Pertpy — end-to-end framework for perturbation analysis — Heumos, Ji, May, Theis et al., Nature Methods, 2025
    scverse-blessed perturbation toolbox — distances, perturbation spaces, harmonisation. The canonical analysis layer.

People

  • Fabian Theis — Helmholtz Munich
    Compositional-FM Perspective author; scvi-tools / Nicheformer.

Regenerated 2026-05-15 from a 277-item corpus by resourcelib-views.